An Operating System
for Genomics
Gardener helps you retrieve public datasets from NIH and Illumina and run rigorous dry-lab pipelines, with every command, parameter, and result tracked. It all runs on your own HPC, so your raw data never leaves your machine.
Explore what Gardener does
Latest from the project
ResearchJul 2026Gardener: An Agentic AI System for Single-Cell RNA Sequence AnalysisJunhan Liu, Zhenke Liu, Yongcheng Shi, Peilin Yu, Minxing Zhang, Jiapeng ZhangRead the paper →ReleaseOct 26, 2026Gardener 3.0.0New: Custom pipelines · New: Pipeline packages · New: Opti2x STAR / StringTie · New: Merge datasets · Sandbox languages · Faster HPC startup on macOS · Fixes.See the release →